PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903524
Common NameARALYDRAFT_903524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 282aa    MW: 31310.5 Da    PI: 8.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903524genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034216238223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
              +Cp Cg  Fs+  +L+ H  + H
   903524 216 VCPQCGAKFSSVTTLVEHVEKtH 238
              6*****************99888 PP

2zf-C2H2201.9e-06253275223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
              +Cp+C++ F+++ +L++Hi + H
   903524 253 VCPKCSRGFRDPVDLVNHIERdH 275
              7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.49E-12457No hitNo description
PROSITE profilePS510397.821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.9E-131349IPR000058Zinc finger, AN1-type
SMARTSM001548.1E-71352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.6E-1091142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-893141No hitNo description
PROSITE profilePS510398.18498147IPR000058Zinc finger, AN1-type
PfamPF014284.1E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
PROSITE profilePS5015710.263215243IPR007087Zinc finger, C2H2
SMARTSM003550.019215238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
PfamPF056051.5E-6217276IPR008598Drought induced 19 protein type, zinc-binding domain
Gene3DG3DSA:3.30.160.601.9E-4219243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954252280IPR007087Zinc finger, C2H2
SMARTSM003557.9252275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKLPFMGFLS SSSSSSRKEA KTTRPTKAHA STSSSSSSSR  180
WSNLLSSAEA GISRLGNDIS QKLQFLSSSS DGIVEVCPQC GAKFSSVTTL VEHVEKTHER  240
NRKQNHGNVT VDVCPKCSRG FRDPVDLVNH IERDHRGTSK A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881802.10.0hypothetical protein ARALYDRAFT_903524
SwissprotQ8VZ420.0SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLD7LHY70.0D7LHY7_ARALL; Putative uncharacterized protein
STRINGscaffold_403025.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.10.0C2H2 family protein